Publications

Garyk Brixi, Tianzheng Ye, Lauren Hong, Tian Wang, Connor Monticello, Natalia Lopez-Barbosa, Sophia Vincoff, Vivian Yudistyra, Lin Zhao, Elena Haarer, Others (2023). SaLT&PepPr is an interface-predicting language model for designing peptide-guided protein degraders. Communications Biology.

Tianlai Chen, Sarah Pertsemlidis, Rio Watson, Venkata Srikar Kavirayuni, Ashley Hsu, Pranay Vure, Rishab Pulugurta, Sophia Vincoff, Lauren Hong, Tian Wang, Others (2023). PepMLM: Target Sequence-Conditioned Generation of Peptide Binders via Masked Language Modeling. ArXiv.

Tianlai Chen, Lauren Hong, Vivian Yudistyra, Sophia Vincoff, Pranam Chatterjee (2023). Generative Design of Therapeutics that Bind and Modulate Protein States. Current Opinion in Biomedical Engineering.

Suhaas Bhat, Kalyan Palepu, Vivian Yudistyra, Lauren Hong, Venkata Srikar Kavirayuni, Tianlai Chen, Lin Zhao, Tian Wang, Sophia Vincoff, Pranam Chatterjee (2023). De Novo Generation and Prioritization of Target-Binding Peptide Motifs from Sequence Alone. bioRxiv.

Tianlai Chen, Pranay Vure, Rishab Pulugurta, Pranam Chatterjee (2023). AMP-Diffusion: Integrating Latent Diffusion with Protein Language Models for Antimicrobial Peptide Generation. NeurIPS 2023 Generative AI and Biology (GenBio) Workshop.

Tianlai Chen, Xiwen Shu, Huiyuan Zhou, Floyd a Beckford, Mustafa Misir (2023). Algorithm selection for protein--ligand docking: strategies and analysis on ACE. Scientific Reports.

Jiazheng Miao, Tianlai Chen, Mustafa Misir, Yajuan Lin (2022). Deep Learning for Predicting 16S rRNA Gene Copy Number. bioRxiv.